Microvellum Community

Dowel Placement in Foundation Library

I am slowly moving to the Foundation Library and trying to get my shops requirements set up. I cannot seem to get base cabinet dowel placement to align between left and right side. I have gone through the global's and have found all of the settings necessary and checked them or unchecked them. Between a finished end and a plain end, the dowels do not align. We use the same dowel pattern for bottoms, fixed shelves, and tops, so this is really inconvenient. Any  thoughts or suggestions?